rs30121741 SNP Detail

Summary

• ID
  rs30121741
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:83484054 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAACCGACCT GCAGCCATCC
  TACCCAAGCC GAGCAAGGCG GGCACTTCCG CCGAGAGCAC TTCCGCCTGC GATCAAGCGA
  CGCCAGCGCA CCTTTGACGT CAGAGGGCCG TCAGGCAGGA AGTGGCTGGT TTTAGCTCTC
  TAGGCGGGTG AGGCCGCAGG AGCTGCTCTG TTCTCGCGAC ATTTGCAGGG ACGATGTGGG
  R
  GTGTCTCGGT GTTGTGGTGT AGGAGGGTGT GCTGAAGTAG AGTTCAGGCG TCCGTAGCCC
  TCTCATCGTT TTAATTAATA TGTGTATATT GCATATTAGT ATGGTGTACA GGGTGAGTCG
  CAGGACAGTC AGGGCTACAC AAAGAAACCC TGTCTTGAAA AACAGAACAA CAAAAATCTT
  GTTATACTTA TTTATTTTGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
ss45896166	mCV27581721	ABI	CRAMUS_MOUSE	f	SNP	G	A	A	A
ss133348066	ENSMUSSNP3504949	ENSEMBL	ENSEMBL_Sanger	f	SNP		A		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
rs30121741					SNP	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:83484054 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17605	CpG island 17605	within coordinates
Dguok	deoxyguanosine kinase	167 bp upstream
Rr399724	regulatory region 399724	within coordinates
Tssr1908	transcription start site region 1908	9 bp upstream
Tssr61663	transcription start site region 61663	812 bp upstream
Tssr61664	transcription start site region 61664	249 bp upstream
Tssr61665	transcription start site region 61665	237 bp upstream
Tssr61666	transcription start site region 61666	222 bp upstream
Tssr61667	transcription start site region 61667	196 bp upstream
Tssr61668	transcription start site region 61668	178 bp upstream
Tssr61669	transcription start site region 61669	145 bp upstream