rs30121837 SNP Detail

Summary

• ID
  rs30121837
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:88622506 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCCTT TCTGTTCCCT CCTGGTCTCC
  M
  TTCAGCACTC TTATGCTGAG ACAGA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45398310	mCV23478997	ABI	CRAMUS_MOUSE	f	SNP		C	A					C		C
ss46744691	NES10759548	PERLEGEN	MM_PANEL2	f	SNP	C		A	A	C	A	A		C	C	A	C		C	C	A	C		C
ss135471511	ENSMUSSNP3343188	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	A							C
ss320836100	CHEV_3_88519121	CHEVERUD	SCREENING_POP	f	SNP													A					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30121837					SNP	C	C	A	A	C	A	A	C	C	C	A	C	A	C	C	A	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46744691	NES10759548	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:88622506 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13390	CpG island 13390	1545 bp proximal
Rit1	Ras-like without CAAX 1	1648 bp upstream
Rr397776	regulatory region 397776	1437 bp upstream
Rr579875	regulatory region 579875	1233 bp proximal
Tssr30018	transcription start site region 30018	1639 bp upstream
Tssr30019	transcription start site region 30019	1685 bp upstream
Tssr30020	transcription start site region 30020	1717 bp upstream