rs30121909 SNP Detail

Summary

• ID
  rs30121909
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:55147828 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGTATTAGAT AGAAGCAACA TGGTCCGTGT TAGAAAGCTG
  TGGAGCAAGG CTTTACAAAT GATTGCTATA ACTTTCCCAG GGAAGGCGAT TCGCTGCCAG
  Y
  GGCCTCAGGC ACTGGGACCC TTCCGGGCCA CCACAAAGCA CAAACCGTCG TGGGAGCAGT
  AAGCCTCCGA GTAGCTGAGG GAGACGCAGT TGCACTTCAG                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
ss47915070	NES11641313	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
rs30121909					SNP	T	T	T	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47915070	NES11641313	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:55147828 () rs orientation: forward

Symbol	Name	Function Class
Inmt	indolethylamine N-methyltransferase	within coordinates
Rr136024	regulatory region 136024	1028 bp distal
Rr136025	regulatory region 136025	773 bp proximal
Rr144444	regulatory region 144444	221 bp distal
Rr144445	regulatory region 144445	776 bp proximal