rs30122550 SNP Detail

Summary

• ID
  rs30122550
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:60658841 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATTCA TCGCTAACTC TTCATACTTA
  R
  AAATGAATCG TACCTCCAAT GCTAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss39649799	mCV24047052	ABI	CRAMUS_MOUSE	f	SNP		G	G					A		A
ss50418810	NES13463002	PERLEGEN	MM_PANEL2	f	SNP	G		G	A	G	A	A		G	A	A	G		G		G	A	G		A
ss147246193	ENSMUSSNP2713318	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G							A					G
ss325639827	CHEV_18_60685423	CHEVERUD	SCREENING_POP	f	SNP													A						G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30122550					SNP	G	G	G	A	G	A	A	A	G	A	A	G	A	G	G	G	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50418810	NES13463002	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:60658841 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10090	CpG island 10090	134 bp proximal
Dctn4	dynactin 4	416 bp upstream
Gm58902	predicted gene, 58902	within coordinates
Rr352957	regulatory region 352957	within coordinates
Tssr151313	transcription start site region 151313	425 bp upstream
Tssr153448	transcription start site region 153448	207 bp downstream
Tssr153449	transcription start site region 153449	274 bp downstream
Tssr153450	transcription start site region 153450	317 bp downstream