rs30122713 SNP Detail

Summary

• ID
  rs30122713
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:55148343 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCACGCAGT CAGCCAGAGG
  CACCTGAGCT GACCCCAGCG GGGGTGTCTT GGTCACATCA CACCTCAGGA CACGAGTGAC
  TGTCCTTCTG AGCTTGGCTT CCTTCTCCTG CCACCTGCTT CTGTGAGAAG GTCAGAGAGA
  TGCTGTTATG GTCACAATCG AGAGCAGGAC CACAATGAGC CGATGTAATA AGCGACAAAG
  K
  TCGCAGTCAT GGAAAACCGC TTTTGTGGTA CTTACGACTT TCTCTGGCCC CACAACCATC
  CTGCCATTTA ATCTAATTGT CAACATGCCA TGCGGCTGGA AACCAAGACA CAAAGATGCT
  CACAGCCACC AGGGTTTGAT TTTGCCCTCC TCTTTCACAC CTCCCCTTCC TTCTTAAAAT
  CATTTGGTCT TTTTGGTGGG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47915084	NES11641327	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	T	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30122713					SNP	G	G	G	G	G	G	G	T	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47915084	NES11641327	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:55148343 () rs orientation: forward

Symbol	Name	Function Class
Inmt	indolethylamine N-methyltransferase	within coordinates
Rr136024	regulatory region 136024	1543 bp distal
Rr136025	regulatory region 136025	258 bp proximal
Rr144444	regulatory region 144444	736 bp distal
Rr144445	regulatory region 144445	261 bp proximal