rs30123685 SNP Detail

Summary

• ID
  rs30123685
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:55148542 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTCGCAGTC ATGGAAAACC
  GCTTTTGTGG TACTTACGAC TTTCTCTGGC CCCACAACCA TCCTGCCATT TAATCTAATT
  GTCAACATGC CATGCGGCTG GAAACCAAGA CACAAAGATG CTCACAGCCA CCAGGGTTTG
  ATTTTGCCCT CCTCTTTCAC ACCTCCCCTT CCTTCTTAAA ATCATTTGGT CTTTTTGGTG
  R
  GTTTCGTTAT TACTGTTTTT GTTTATGTGT ATGTGTGTAT ATGTGCATGT GTGTGTGGAA
  ATGTGCATGC AAATGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTAG
  GCCAGAGTAC AACCTCAGGT GTCATTCCTC TGGAGCTGAC TCCTTTGTCT TCTTTTATTG
  ACACAGTGGC TGAGGTGACC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47915086	NES11641329	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30123685					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47915086	NES11641329	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:55148542 () rs orientation: forward

Symbol	Name	Function Class
Inmt	indolethylamine N-methyltransferase	within coordinates
Rr136024	regulatory region 136024	1742 bp distal
Rr136025	regulatory region 136025	59 bp proximal
Rr144444	regulatory region 144444	935 bp distal
Rr144445	regulatory region 144445	62 bp proximal
Rr146343	regulatory region 146343	1858 bp proximal
Tssr61113	transcription start site region 61113	1917 bp downstream