rs30123689 SNP Detail

Summary

• ID
  rs30123689
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:55149372 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGTTT TCCTGAGACA CATGCCTGTT
  M
  CCTCACCTCA ACTACAAGAG AGGTC                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47915090	NES11641100	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	A	A	C	A	A	A		C	A	A	C		A
ss133207733	ENSMUSSNP6047543	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A						A
ss321805440	CHEV_6_55122381	CHEVERUD	SCREENING_POP	f	SNP												A					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30123689					SNP	A	A	A	A	A	A	A	C	A	A	A	A	C	A	A	C	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47915090	NES11641100	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:55149372 () rs orientation: forward

Symbol	Name	Function Class
Inmt	indolethylamine N-methyltransferase	within coordinates
Rr136025	regulatory region 136025	372 bp distal
Rr144444	regulatory region 144444	1765 bp distal
Rr144445	regulatory region 144445	407 bp distal
Rr146343	regulatory region 146343	1028 bp proximal
Tssr61113	transcription start site region 61113	1087 bp downstream
Tssr61114	transcription start site region 61114	1540 bp downstream