rs30124404 SNP Detail

Summary

• ID
  rs30124404
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:37928272 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGGCCTCCCA GAGAGCCTCG TCAGGGACGC TGCTTCCAGT
  TCTGTGGGTT GTGGAGACAC AGCAATTCTT TCTGTGCTTC TATACTCCCA GGCATCTCCT
  K
  TAGCTCATGA GGGGCCCCAT GTCATCTGTA CAATTCTCTG TAGGAAATTC TTTCTCCTTT
  CGAATGGTTT CTCCTGTCAT ATATGTGTGT GTGTGTGTTT                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss46916054	NES10815593	PERLEGEN	MM_PANEL2	f	SNP	G	T	G	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs30124404					SNP	G	T	G	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46916054	NES10815593	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:37928272 () rs orientation: forward

Symbol	Name	Function Class
Rr575579	regulatory region 575579	591 bp proximal
Rr575580	regulatory region 575580	1799 bp proximal