rs30124410 SNP Detail

Summary

• ID
  rs30124410
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:37928323 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATAATACTG GTCATCATGT
  GAGGGAAATG CTCATGAGCA GAGCACCTGT GGCCTCCCAG AGAGCCTCGT CAGGGACGCT
  GCTTCCAGTT CTGTGGGTTG TGGAGACACA GCAATTCTTT CTGTGCTTCT ATACTCCCAG
  GCATCTCCTT TAGCTCATGA GGGGCCCCAT GTCATCTGTA CAATTCTCTG TAGGAAATTC
  Y
  TTCTCCTTTC GAATGGTTTC TCCTGTCATA TATGTGTGTG TGTGTGTTTA ATTCATTTTA
  ATATATCAGC AACACGATAT TAATTGCACC AACAATTCTT TAGTTTTAAG GCCCCATCTA
  GGAAAGTTAT CATGGCTAAA GTACAGAATA TTTAGCCAGT ATATTGGGGC AAGTGTGTAG
  GTGGGTGGTA GAGAATTTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss46916060	NES10815595	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	C	C	T	T		T	T	T		C
ss320713672	CHEV_3_37773096	CHEVERUD	SCREENING_POP	f	SNP								T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs30124410					SNP	C	C	T	C	C	T	T	T	T	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46916060	NES10815595	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:37928323 () rs orientation: forward

Symbol	Name	Function Class
Rr575579	regulatory region 575579	540 bp proximal
Rr575580	regulatory region 575580	1748 bp proximal