rs30125983 SNP Detail

Summary

• ID
  rs30125983
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:115060648 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAACAGCTTG CCTGACTCAT
  ATGGAAATTT ATTCATTAAA AAGCAAAACA AACAAACAAA CAAACAAACA AACAAAACCC
  CACTACTTGA AGTTCTATTT CTGGGGCTTG GTAAAAGCCA CTGTCTGTGA CAGGACTAGG
  GACACATGTC ACCCTGACAC AAGGATGCTT AGCTCCCCTT GATGCACTTC CTTCCGGTCC
  R
  TCACTTGATT ACAGATGCCC ATTCCCTTTT TCCTTGCCTG GTGGCTGAAC GGTGGCATTC
  CTCCTGTGGC ATCTGTCCTC GGACACACTG TGATGGACAC CTGCCAAAAA GCCTTCACTG
  GGTAGGCAGG CTTCCACATC ATTGGTCTGT GTGCCTCCTC CCTTCACCCC CAAGGTGACT
  CTGAGTCTTC ATCCAGCCAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46375014	mCV23362045	ABI	CRAMUS_MOUSE	f	SNP		G	A					A
ss61227467	NES16843214	PERLEGEN	MM_PANEL2	f	SNP	G		A	A	A	G	A		A	A	A	A	A	A	A	G
ss137004586	ENSMUSSNP481320	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30125983					SNP	G	G	A	A	A	G	A	A	A	A	A	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61227467	NES16843214	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:115060648 () rs orientation: forward

Symbol	Name	Function Class
2210411A11Rik	RIKEN cDNA 2210411A11 gene	1296 bp upstream
Osbpl10	oxysterol binding protein-like 10	within coordinates