rs30126001 SNP Detail

Summary

• ID
  rs30126001
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:110465014 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGAGC AGGTAGAGGA GGGGCCCACC
  R
  CCATCAGCAG CCGCCTGCTC CATCA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss46374747	mCV25039878	ABI	CRAMUS_MOUSE	f	SNP	A	A					G	A
ss47780465	NES11982430	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	G	A		A	G	A		A	A	G		G
ss136958664	ENSMUSSNP4912796	ENSEMBL	ENSEMBL_Sanger	f	SNP		A						A
ss323193668	CHEV_9_110538450	CHEVERUD	SCREENING_POP	f	SNP											A				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs30126001					SNP	A	A	A	A	G	A	G	A	G	A	A	A	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47780465	NES11982430	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:110465014 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22384	CpG island 22384	380 bp distal
Mir8107	microRNA 8107	53 bp downstream
Nbeal2	neurobeachin-like 2	within coordinates
Rr192758	regulatory region 192758	14 bp distal
Rr198752	regulatory region 198752	1387 bp proximal
Rr202597	regulatory region 202597	308 bp proximal