rs30126098 SNP Detail

Summary

• ID
  rs30126098
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:34354797 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGCTGGTTGT TCAGAGGCGG ATGTGATCTG GTTTTGAGTA
  GAGTCCCGGT AGGCTGGGAT GGGTAGGTTA AGAGCCCGAC TCCTGCCTGC CTAGTGGAGT
  Y
  TACGATGGCA AACCGATTGT TCGCTTTTAA ATCATTTATC TCTGTCATAG GCTTTGGACT
  CAGCTTTTGA GACGGAAGCG TTAGGTTTTG TAGATCCAT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39651055	mCV22699474	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	T
ss146937898	ENSMUSSNP3400977	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30126098					SNP	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:34354797 () rs orientation: forward

Symbol	Name	Function Class
Apc	APC, WNT signaling pathway regulator	within coordinates
Cpgi9813	CpG island 9813	22 bp distal
Rr370354	regulatory region 370354	843 bp downstream
Tssr150444	transcription start site region 150444	813 bp downstream
Tssr150445	transcription start site region 150445	768 bp downstream
Tssr150446	transcription start site region 150446	724 bp downstream
Tssr150447	transcription start site region 150447	624 bp downstream
Tssr152786	transcription start site region 152786	85 bp upstream