rs30126171 SNP Detail

Summary

• ID
  rs30126171
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:122066228 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  ATAACAAAGC AAGGAAATGA AAACTTTAAA GCTTCCTCAC AAAAGCATTA ATTCCAAAAT
  AATATGCTGA TGAACACAAA TGAAAATTAA AACTGTTTCC GTGACTTCTT TTGTTCACTT
  GTTGATTGAT TAAGACAGAG TTTCTCTGTG TAGCCCTGTC TATCCTAGAA CTCACTATGT
  AGACCAAGCT GTCCTTGAAC CCAGAGATCC ACCTGCCTCT GCCTCTCAAC CCCTGGGACT
  AAAGGTGTGC ACCACCACCC TGCTATTTTG GCTTTTTAAA GAAAATACAA AAACAACAAA
  M
  AAAAAAAAAA CCTTGCAAAT ATTTGAAACA TAAAAAACTG AACAAAATTT TCTGAATTTG
  TGCTTCAAAA GATAGTGTGA AGATAATGAA AAGACAATTC CCAGAATAGG TAAAAATATT
  TAGAGACCCT ATCTGATAAG GTCTTATATT CAGAATATGT AGAGATCTTA CAATTTAGTA
  AGAATGCCTA ATAAAGGGGG CTGGAGAGAT GGCTCAGCAG TTAAGAGCAC TGACTGCTCT
  TCCAGAGGTC CTGAGTTCAA TTCCCAGCAA CCACATGGTG GCTCACAACC ATCTGTAATG
                                                                   
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45398838	mCV22780982	ABI	CRAMUS_MOUSE	f	SNP	A	A	A	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30126171					SNP	A	A	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:122066228 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13766	CpG island 13766	1444 bp proximal
Dnttip2	deoxynucleotidyltransferase, terminal, interacting protein 2	1817 bp upstream
Gm17494	predicted gene, 17494	within coordinates
Rr584272	regulatory region 584272	764 bp distal
Rr584273	regulatory region 584273	1319 bp proximal
Rr584274	regulatory region 584274	1820 bp proximal
Tssr31491	transcription start site region 31491	1792 bp upstream