rs30126997 SNP Detail

Summary

• ID
  rs30126997
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:86347906 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGCTA TGGGAGGGTG AGTTTACTGG
  Y
  TTGCTCCCAT GGTTTCACTG AACCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss46375120	mCV23664558	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	C
ss136756075	ENSMUSSNP1247705	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T
ss323056340	CHEV_9_86359460	CHEVERUD	SCREENING_POP	f	SNP					T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs30126997					SNP	T	T	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:86347906 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22101	CpG island 22101	736 bp distal
Cpgi22102	CpG island 22102	1064 bp proximal
Dop1a	DOP1 leucine zipper like protein A	1288 bp upstream
Rr684095	regulatory region 684095	914 bp distal
Rr684096	regulatory region 684096	413 bp distal
Rr684097	regulatory region 684097	874 bp distal
Rr684098	regulatory region 684098	811 bp proximal
Rr684099	regulatory region 684099	1228 bp proximal
Rr684100	regulatory region 684100	1312 bp proximal
Tssr86391	transcription start site region 86391	1310 bp upstream
Tssr86392	transcription start site region 86392	1320 bp upstream
Tssr86393	transcription start site region 86393	1371 bp upstream
Tssr90780	transcription start site region 90780	910 bp upstream
Tssr90781	transcription start site region 90781	895 bp upstream
Ube3d	ubiquitin protein ligase E3D	903 bp upstream