rs30127513 SNP Detail

Summary

• ID
  rs30127513
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:48192910 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATGCATCAA ATGAACAGCT
  TTCATAATGA TTGCTGTTCC ATTTTTTAAT TACAATAATA AATATTCCTT TGCATTTTTC
  ACAGGTTGAG AATATATAAT TTACATTTAT ATTATATATA CATTTGTATT ATATTGCATA
  TATATTGTAT ATATAACTAT ACATATCTAT GTATATATAC ATAGATACAA TGCATGTATA
  Y
  ACATATAATG CATGTAGCAG ATTTGGGAGC ACATGGTTTT TTAATCCTAG CATTCAGGCT
  GGGGCAGAAA GATTGTGAGT TTGGGGCAGC TCAATATCCA TAGTGAGTTC TAAACCACCC
  TAAACTATAC TGTGAGACTC TGTCTCAAAA GCAAAACAAA GATAACAGAA AACCAATAAA
  AGCAAAAGAA AGATACCAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46375427	mCV25311244	ABI	CRAMUS_MOUSE	f	SNP	T	C	C	C
ss136450981	ENSMUSSNP377250	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C		C
ss322952924	CHEV_9_48089693	CHEVERUD	SCREENING_POP	f	SNP					T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30127513					SNP	T	C	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:48192910 () rs orientation: forward

Symbol	Name	Function Class
Gm51672	predicted gene, 51672	within coordinates
Nxpe4	neurexophilin and PC-esterase domain family, member 4	within coordinates
Rr203996	regulatory region 203996	740 bp proximal