rs30127595 SNP Detail

Summary

• ID
  rs30127595
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:86415904 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACTTC TTTCTTACTT GGGGCGGTGT
  Y
  CACGTGCCCA AAACAGCGTC CCCAC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45898327	mCV22849476	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	C
ss133357138	ENSMUSSNP5662407	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		C
ss321846510	CHEV_6_86388916	CHEVERUD	SCREENING_POP	f	SNP					T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30127595					SNP	C	C	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:86415904 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
C87436	expressed sequence C87436			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
				Noncoding-Transcript-Variant
Gm44790	predicted gene 44790			Intron
Gm66311	predicted gene, 66311			282 bp upstream
Rr368111	regulatory region 368111			107 bp downstream
Rr399735	regulatory region 399735			434 bp downstream
Rr633412	regulatory region 633412			538 bp distal
Rr633413	regulatory region 633413			293 bp distal
Rr633414	regulatory region 633414			285 bp distal
Rr633415	regulatory region 633415			185 bp distal
Rr633416	regulatory region 633416			within coordinates
Tssr57468	transcription start site region 57468			517 bp downstream
Tssr57469	transcription start site region 57469			491 bp downstream
Tssr57470	transcription start site region 57470			209 bp downstream
Tssr57471	transcription start site region 57471			195 bp downstream
Tssr57472	transcription start site region 57472			164 bp downstream
Tssr61792	transcription start site region 61792			286 bp upstream