rs30128771 SNP Detail

Summary

• ID
  rs30128771
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:61562216 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AATAGTGACT GGAGTTTTTG CCCACACACA TGAGTATTGT
  CTAAAACATG TCTTCTTTGT AGCAGCTAGG CCCTGCCACC ACTGTGCTTG GCTGAGGTCA
  Y
  AAATCTGTTG TAACCTGTAG CTTCCCTGTC ACTTCTCTGG CTCTCCTCTC CTGCTAAGCT
  TTGTTTCCTG GCTGTATGTA ATTGGAACCT CCTGCCACT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss39153505	mCV23119394	ABI	CRAMUS_MOUSE	f	SNP		T	C				C		T
ss62418783	NES17249536	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	T		C	T	C	C	C	C	C	C	C
ss139612994	ENSMUSSNP4969780	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C						T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30128771					SNP	T	T	C	C	C	T	C	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62418783	NES17249536	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:61562216 () rs orientation: forward

Symbol	Name	Function Class
Gm5461	predicted gene 5461	85 bp downstream
Rr301285	regulatory region 301285	1454 bp distal
Tssr129059	transcription start site region 129059	1126 bp downstream