rs30129069 SNP Detail

Summary

• ID
  rs30129069
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:87614400 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCTAG CTTTCTTCTG GCTTCTCCTC
  R
  GCATTCAGGA AAATGGCCTC TGAAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46374775	mCV24942036	ABI	CRAMUS_MOUSE	f	SNP	G	A	G	A
ss136773423	ENSMUSSNP2645045	ENSEMBL	ENSEMBL_Sanger	f	SNP		A		A
ss323061729	CHEV_9_87627182	CHEVERUD	SCREENING_POP	f	SNP					A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30129069					SNP	G	A	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:87614400 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22111	CpG island 22111	883 bp distal
D030062O11Rik	RIKEN cDNA D030062O11 gene	257 bp downstream
Gm69731	predicted gene, 69731	within coordinates
Rr684220	regulatory region 684220	597 bp distal
Rr684221	regulatory region 684221	913 bp distal
Rr684222	regulatory region 684222	within coordinates
Rr684223	regulatory region 684223	1021 bp proximal
Tbx18	T-box18	1087 bp upstream
Tssr2959	transcription start site region 2959	1103 bp upstream
Tssr90806	transcription start site region 90806	1190 bp upstream
Tssr90807	transcription start site region 90807	1175 bp upstream
Tssr90808	transcription start site region 90808	1074 bp upstream
Tssr90809	transcription start site region 90809	1062 bp upstream