rs30130363 SNP Detail

Summary

• ID
  rs30130363
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:51366797 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CATGGACCAA GGGATGACAG GTGGAAGCTG CAGCGGGAGG
  ATGGGGGGTG TTACTGCAGG TATCATACAG GGAAGGGAAC CCCACGAAGA GATAAGAGTG
  R
  AGATTGGGTA CAAATTGACT GGATCGGACT TCTGAGAGTC TAATAACAGG CGGTTTATTC
  CCAGTGTATT TAAACCCAGT ATAATTTGGA AAAAAAAGT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss39154212	mCV23506936	ABI	CRAMUS_MOUSE	f	SNP	G	G	G					A		G
ss49182487	NES12491416	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	A	G		G	G	A		A	G	G		A
ss139475203	ENSMUSSNP5264643	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G							G
ss324621299	CHEV_14_51749015	CHEVERUD	SCREENING_POP	f	SNP												G				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30130363					SNP	G	G	G	G	G	A	G	A	G	G	A	G	A	G	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49182487	NES12491416	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:51366797 () rs orientation: forward

Symbol	Name	Function Class
Rnase6	ribonuclease, RNase A family, 6	within coordinates
Rr404085	regulatory region 404085	362 bp downstream
Rr491778	regulatory region 491778	763 bp distal
Rr491779	regulatory region 491779	262 bp distal
Rr491780	regulatory region 491780	1685 bp proximal
Tssr125412	transcription start site region 125412	414 bp downstream
Tssr125413	transcription start site region 125413	393 bp downstream
Tssr125414	transcription start site region 125414	347 bp downstream
Tssr125415	transcription start site region 125415	322 bp downstream
Tssr125416	transcription start site region 125416	290 bp downstream
Tssr125417	transcription start site region 125417	268 bp downstream
Tssr125418	transcription start site region 125418	227 bp downstream
Tssr125419	transcription start site region 125419	201 bp downstream