rs30130884 SNP Detail

Summary

• ID
  rs30130884
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:121580676 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGGTTTATGC ATTTACCTGC TTTTCAAATG CATACTAAGA
  ATCTAAAATA AGGGTTCCAC TCACTACTTA TTTAAGGGTT TGAAAGTTGG GCTGGAGCGA
  Y
  GGCTCAGCCA TAAAAGGCAC TTGCTGCTCT TGCAGGGGGT CTAGGTTTGA TCCAGCACCC
  ACACAGCAGC TCACGACTGT GTAACTCTCT TCTAGCCTC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45399030	mCV24754100	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	C
ss135729198	ENSMUSSNP5205699	ENSEMBL	ENSEMBL_Sanger	f	SNP		T		C
ss320905841	CHEV_3_121489945	CHEVERUD	SCREENING_POP	f	SNP					T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30130884					SNP	T	T	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121580676 () rs orientation: forward

Symbol	Name	Function Class
4633401B06Rik	RIKEN cDNA 4633401B06 gene	473 bp downstream
Abcd3	ATP-binding cassette, sub-family D member 3	within coordinates
Tssr35428	transcription start site region 35428	783 bp downstream