rs30130990 SNP Detail

Summary

• ID
  rs30130990
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:115817614 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGAAATGGT GGTGGATCTG
  GGAGGAGCTA CGGGGAGGAG TGGGAAATGC ATATGATCAA AATACATTGT ATGACCTTCT
  TAAAGAATTG ACAAACATAT ATTTTTAAGA GAATGTAAGA CCACATTTTT TTAATATTTG
  TCAGGCCAAA TCACTTTACA AATGAATGTA AATCCCTGAC AAGAGTGGTC AGTGACTTAA
  Y
  TGAAACATAA TGACTGTATT TTATTGCCGT CTCTACTCCA GGGGTTGCCA CATCTGCAAA
  CTTCCGGGAA GAGTCATGGG GATTCGAGTG CTCCGGTTCT CCCTGGTGGT CATCCTTGTG
  TTGCTGCTGG TAGCGGGGGC TTTGACCAAC TTACTCCCCA ACATCAAAGA AGACAAGATG
  CTCACTCTGC GTAGGGAGAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
ss46917150	NES10677825	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
rs30130990					SNP	C	C	C	C	C	C	T	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46917150	NES10677825	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:115817614 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Extl2	exostosin-like glycosyltransferase 2			Intron
				Noncoding-Transcript-Variant
Rr583641	regulatory region 583641			1845 bp proximal