rs30131032 SNP Detail

Summary

• ID
  rs30131032
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:86579566 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCAG CAGTCGGGAG GCAGAGGCAG
  K
  CAGATTTCTG AGTTCTCTGA GTTCA                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss46376025	mCV23664598	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	T
ss136760248	ENSMUSSNP2807274	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G
ss323057519	CHEV_9_86591546	CHEVERUD	SCREENING_POP	f	SNP					G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs30131032					SNP	G	G	G	T	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:86579566 () rs orientation: forward

Symbol	Name	Function Class
A330041J22Rik	RIKEN cDNA A330041J22 gene	within coordinates
Cpgi22104	CpG island 22104	1144 bp distal
Gm55057	predicted gene, 55057	1530 bp downstream
Me1	malic enzyme 1, NADP(+)-dependent, cytosolic	1599 bp upstream
Rr205233	regulatory region 205233	373 bp distal
Rr206830	regulatory region 206830	965 bp distal
Rr211051	regulatory region 211051	1036 bp proximal
Tssr90786	transcription start site region 90786	1857 bp upstream
Tssr90787	transcription start site region 90787	1835 bp upstream
Tssr90788	transcription start site region 90788	1724 bp upstream
Tssr90789	transcription start site region 90789	1659 bp upstream
Tssr90790	transcription start site region 90790	1555 bp upstream