rs30131562 SNP Detail

Summary

• ID
  rs30131562
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:107465067 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGAC CCCGCGCCCC ATTCCCGTGT
  Y
  CCCAATTCTC GGTTCCAGGA ATGCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss46375567	mCV22576892	ABI	CRAMUS_MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs30131562					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:107465067 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22297	CpG island 22297	within coordinates
Gm16343	predicted gene 16343	400 bp upstream
Gm68835	predicted gene, 68835	388 bp downstream
Hyal3	hyaluronoglucosaminidase 3	509 bp downstream
Ifrd2	interferon-related developmental regulator 2	mRNA-UTR
Rr401663	regulatory region 401663	230 bp downstream
Rr686552	regulatory region 686552	216 bp distal
Rr686553	regulatory region 686553	within coordinates
Rr686554	regulatory region 686554	779 bp proximal
Tssr87008	transcription start site region 87008	212 bp downstream
Tssr87009	transcription start site region 87009	188 bp downstream
Tssr87010	transcription start site region 87010	122 bp downstream
Tssr87011	transcription start site region 87011	67 bp downstream
Tssr87012	transcription start site region 87012	within coordinates