rs30131638 SNP Detail

Summary

• ID
  rs30131638
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:115923353 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCGAA AGGGCTATCT CTCCTGAAAA
  K
  ATGATTGCAA AATGAAACTG CCAAC                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45457929	mCV23276034	ABI	CRAMUS_MOUSE	f	SNP		G	T					G		T
ss46918428	NES10671994	PERLEGEN	MM_PANEL2	f	SNP	G		T	T	T	G	T		G	T	T	G		G	T	G		G
ss135669152	ENSMUSSNP5416790	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	T							T
ss320894373	CHEV_3_115832622	CHEVERUD	SCREENING_POP	f	SNP													T				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30131638					SNP	G	G	T	T	T	G	T	G	G	T	T	G	T	G	T	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46918428	NES10671994	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:115923353 () rs orientation: forward

Symbol	Name	Function Class
D3Mit215	DNA segment, Chr 3, Massachusetts Institute of Technology 215	752 bp proximal
Gm43109	predicted gene 43109	within coordinates
Rr583657	regulatory region 583657	within coordinates
Tssr35297	transcription start site region 35297	317 bp upstream
Tssr35298	transcription start site region 35298	240 bp upstream
Tssr35299	transcription start site region 35299	80 bp upstream
Vcam1	vascular cell adhesion molecule 1	16 bp upstream