rs30131840 SNP Detail

Summary

• ID
  rs30131840
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:44216511 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  CGGACATCAC ATTATGTCTA AGGGTGTATC TGTCTGAAGA GGAAGTCAGA AGGATGGAGA
  AGGAAAATAA AACGAAACTC CTTAGTTTTG TGATCTTAAA TTACTTAAGC CATATGGGCC
  TAATGCACTA CTGAGGCTCA CTAAGGGTTT GCTACATCTA GCCTTGTTTC TGAGTGTTAA
  TTAGGGGATG GAGAAGCATC CAACCCCCCC AGGATCCTTA CCTGACATTT CATCACTAGT
  CAAAGTACAA AACCATCCCA TCAACAATTA TCAGGAGAGT ATATACTCTA TCGCCAGGCA
  Y
  CAATGAACTC TGAGCCACAA TCCAGAAGAA AGGCCCAGGT CCTAAACAAG GACTCACAGA
  CCAGGATCTG ACGGCTGAAC CCCGCAACCA ATCCAAGGCG CAGGACCAGG GAGATCGGGA
  CACGAAAAGG CCGGTGGGCA GCCTCGCCTG GGCGCTGAGG CCGGAGGATA GGTAGCTAGA
  ACTCAGAGGA AGTAGCCCAT CCGGGAGAGC TTCCCGGGAT CCCCGGCGTC AAGCGTGGTG
  CCGAGGGAGT CCAGCCGCAG AGACCCCCTA GCCCGAGGGC GCGGAGGCTA AGGGCCGGCA
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46375177	mCV23032969	ABI	CRAMUS_MOUSE	f	SNP	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30131840					SNP	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:44216511 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21648	CpG island 21648	7 bp proximal
Hinfp	histone H4 transcription factor	within coordinates
Rr368726	regulatory region 368726	469 bp upstream
Tssr89139	transcription start site region 89139	381 bp downstream