rs30131976 SNP Detail

Summary

• ID
  rs30131976
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:115818095 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTAAATCA TTACCAGGCA
  GTACCGAGTC TGCACAAGGT GATCGTGGTG TGGAACAATG TGGGAGAGAA GGGCCCAGAG
  GAGTTGTGGA ATTCTCTAGG GCCTCACCCG ATCCCTGTCA TCTTCAAACC ACAAACAGCA
  AACAAAATGA GAAACCGACT CCAGGTCTTC CCTGAAGTGG AGACCAACGG TGAGTCAAAG
  Y
  TGGATCTGAC AGGGTCTGAC AGGGCTCCGG TGGGTGTGTG GGCGGACTTC CGGCTCTCAG
  GGAGGTTGTT AGAAAGGCAC TTTAAAACGC TTAAGCCATT TCCAGATTTC CAACAGGCAG
  CTCGCGTGGC GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT
  GTTGGGGGGG TTACTATTGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss45427332	mCV23906595	ABI	CRAMUS_MOUSE	f	SNP		T	C						C
ss46917156	NES10677830	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	C	C	C	C	C	C	C	C	C	C
ss135668114	ENSMUSSNP1766917	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs30131976					SNP	T	T	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46917156	NES10677830	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:115818095 () rs orientation: forward

Symbol	Name	Function Class
Extl2	exostosin-like glycosyltransferase 2	Intron
Rr583641	regulatory region 583641	1364 bp proximal