rs30132189 SNP Detail

Summary

• ID
  rs30132189
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:37990628 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCTCGGCAGC CTTAGCAAAT CATCTCGTCT TTTCATTGCT
  CATCCCTCCC TCCCAGACAC GGTCCAAGAC ATTCCATTTT TATGTGCGTT TGTATTTTCT
  Y
  AGGAACAGAC ACATTAACAG GATGGGTTTA ACCATAGTTC AGTTTATTTA CGATCCTCTG
  GTTAAATGTT AATAGCCTCA AGTCAAGGAT CTAACGCAAG                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46916900	NES10812202	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30132189					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46916900	NES10812202	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:37990628 () rs orientation: forward

Symbol	Name	Function Class
Gm20755	predicted gene, 20755	within coordinates
Rr1891	regulatory region 1891	within coordinates
Rr575590	regulatory region 575590	758 bp distal
Rr575591	regulatory region 575591	400 bp distal
Rr575592	regulatory region 575592	within coordinates
Rr575593	regulatory region 575593	949 bp proximal