rs30132192 SNP Detail

Summary

• ID
  rs30132192
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:37991311 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCAGTAGCA TCCCCCTTCT
  TAAAGCGAAC TTCTAGGCAG GGTAACATCA CAGAATTTGC CCAAGGTCAC ATGTCTGATG
  AGTGGCTGAG TAGGGACTGA CTCCTAAGTG TACTCTCCTG GCCACCATAC TGTTTCTTTA
  TCTTTTCACA GTTTCCATGA AAGTCCTTTT TTGACTATTT CCTACTGGGG GTCAAACTTG
  K
  TAGATTAGAT TATTAGACTA TTATTGCATG TCTATATGAG GGATGGAATT CCCCCCACCC
  CCAACTTCCT AAGTCATCTT AATGCACTGG ATAAAGAGCT TGAGCTGCCA CACACGCCAT
  CTATTGTATG TTTGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TGCTTGTGTG
  TTCCTTGTCA AGTCTTTCTG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46916903	NES10812065	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	G	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30132192					SNP	T	T	T	T	T	T	T	T	G	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46916903	NES10812065	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:37991311 () rs orientation: forward

Symbol	Name	Function Class
Gm20755	predicted gene, 20755	within coordinates
Rr1891	regulatory region 1891	70 bp distal
Rr575590	regulatory region 575590	1441 bp distal
Rr575591	regulatory region 575591	1083 bp distal
Rr575592	regulatory region 575592	252 bp distal
Rr575593	regulatory region 575593	266 bp proximal