rs30132958 SNP Detail

Summary

• ID
  rs30132958
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:44055033 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGCCTCAG GGTTCCACGG
  CTCCTCCCTG GATTCAAGCA GACCCTGTGA TGGGCACCAG CCACTTCATG CTTTATGGTT
  GAAGCCTTCA AATGAAAGGA CAGCCAAGTC TGAGGAGAGG CAGGAGGTTG AAGCTGGCTC
  AAGGTCCAGC AAAACAAAAA GACAACAAAT GAAGCATCTC CTCTTCCCAG GAGCATTCAC
  Y
  CCGCAACTCT GCTCCGCAGG GCACTGCTCT CGGAGGTGGG TGAGTGGGCA CCCAGAGCAG
  TTATCTGAAC ACTAACTGCT GCCTGGAACC AACCACGTGC TGCCAGAATA AAACAATGCT
  CTTTTCCAGG GAAACCTCAT GGCAGAGAAA GGAGACTATA GGCACCTAAT GTGCCACCTC
  TCTAGCCAGA CATCCTTGTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46376620	mCV25148514	ABI	CRAMUS_MOUSE	f	SNP	C	T	T	T
ss136391637	ENSMUSSNP3707903	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30132958					SNP	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:44055033 () rs orientation: forward

Symbol	Name	Function Class
Cbl	Casitas B-lineage lymphoma	within coordinates
Mcam	melanoma cell adhesion molecule	1009 bp downstream
Rr677565	regulatory region 677565	385 bp proximal
Rr677566	regulatory region 677566	712 bp proximal
Rr677567	regulatory region 677567	805 bp proximal
Tssr89112	transcription start site region 89112	791 bp downstream
Tssr89113	transcription start site region 89113	977 bp downstream