rs30134309 SNP Detail

Summary

• ID
  rs30134309
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:115819706 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGTGTACCG TTGTGGCGGC
  AGGTGTTTGT TTTGGCTTGG TTGTCCCTAA GTGCCAGCTT GAGTGAGCCG GCATAAGTGG
  CCTGCTGGCT CTCCCACTGA GCATATACTA ATAATAGTTG GGCTTCGCAA GCTATGTTGC
  AGATTGCCTG AGTCCAGAAC TGTGTGCAGA TCTTCTTGAT TAAATATTGT GCTATCCTAG
  Y
  TGATTATATT TGCAGTAAGT CCTCCCTAAG GCCACATAGC ACCATGGGAC TCGAAGGGCA
  GGTGGTGACA GCACTGTGTC CATGCCAGCC TTCTAAAAGC TGCTGCTTTT AATTTCATGC
  CTAACATATT GATCAATGAA TTGTACTTTT TTCTGTGCTA ACAGGTTTTT TTCCTGCCCC
  CAAAACGACA TCTTTTTAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss46917189	NES10677763	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs30134309					SNP	T	T	T	T	T	T	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46917189	NES10677763	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:115819706 () rs orientation: forward

Symbol	Name	Function Class
Extl2	exostosin-like glycosyltransferase 2	Intron
Rr583641	regulatory region 583641	22 bp distal