rs30134345 SNP Detail

Summary

• ID
  rs30134345
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:115921319 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGAAGGCTG CCTAGACATA
  AACTATGCAT GCAGAGCCAG CATAATTGAA AGCAGCCGTC CAGGCTCAGC TGCTTGGGAA
  GCCCAGCTTC AGGAGGGGCT TGCTGAAATT TCAATTAAGG TTCATTGGCA AAGTTGGGCT
  GGAGCACAGT AGGAAGGTAC CAAGGTGATT AAAAGATGAA TCAAACAAGA TGCTCATGAA
  R
  AAATGCCTTA TGGGAGTCTC ATTTCTTTCT TTCTTTCTTT CTTTCTTTCT TTCTTTCTTT
  CTTTCTTTCT CTCTCTCTCT CTCTCTCTCT CTCTCTCTCT CTCTCTCTCT CTCTCTCTCT
  CTCTCTCTCT CTCTCTCTCT CTCTCTCTTT CTTCTTTTTG GAAAGCAACA CCATCAGTAA
  CCAAAGAAAA ATGATTCCTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46918356	NES10672169	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30134345					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46918356	NES10672169	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:115921319 () rs orientation: forward

Symbol	Name	Function Class
Gm43109	predicted gene 43109	781 bp upstream
Rr583656	regulatory region 583656	20 bp distal
Rr583657	regulatory region 583657	1777 bp proximal
Tssr35297	transcription start site region 35297	1705 bp downstream
Tssr35298	transcription start site region 35298	1779 bp downstream
Tssr35299	transcription start site region 35299	1945 bp downstream
Vcam1	vascular cell adhesion molecule 1	Intron