rs30134588 SNP Detail

Summary

• ID
  rs30134588
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:94392907 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTGCCTTTGT GAAGTTCCAG ACTCACGCTG AGGCCCAGGC
  AGCCATCAAC ACCCTTCACA GCAGCCGGAC CCTACCGGTG AGCCCCAGTC CCCTCCTTCC
  W
  TGTCTCTCTC TCCCACTGGC ACACTTGCCA GGCCCTGGCA CAGAGCACAC TTCCATTCAG
  GATAGGACTT GTAATGAACT TTCCCAAAAG AATCAACGA                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	DBA/2J
ss45398976	mCV22282215	ABI	CRAMUS_MOUSE	f	SNP	T	A
ss135505522	ENSMUSSNP6066814	ENSEMBL	ENSEMBL_Sanger	f	SNP		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	DBA/2J
rs30134588					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:94392907 () rs orientation: forward

Symbol	Name	Function Class
Celf3	CUGBP, Elav-like family member 3	within coordinates
Cpgi13484	CpG island 13484	1234 bp distal
D3Umi4	DNA segment, Chr 3, University of Michigan 4	77 bp distal
Gm65215	predicted gene, 65215	1381 bp upstream
Gm65218	predicted gene, 65218	628 bp upstream
Rr580639	regulatory region 580639	1392 bp distal
Rr580640	regulatory region 580640	891 bp distal
Rr580641	regulatory region 580641	138 bp distal
Tssr30454	transcription start site region 30454	1265 bp downstream
Tssr30455	transcription start site region 30455	1249 bp downstream
Tssr30456	transcription start site region 30456	1192 bp downstream
Tssr30457	transcription start site region 30457	704 bp upstream
Tssr30458	transcription start site region 30458	732 bp upstream
Tssr34391	transcription start site region 34391	1372 bp upstream