rs30134869 SNP Detail

Summary

• ID
  rs30134869
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:123620406 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTGAACAAG CTGGCTTCAG
  CATTCCATTT GCAAGAGGGT AGAAGGGTTC AAAGGTAAGA TAATTTGGCT TTTAGCAATC
  TCAGGCCACA TACAGACCCA CAAGAACCCA GGGTAGCCTT CAAAGGCTCA GCTGAACATG
  CTGGCTTCTT CACACTGAAC AAAGTTGCCA TCATGGGTAA ATTCTTGGTG GTAGGAGTAA
  R
  AAGGGGCCAG AGAGAACAGG AAGCTATCTA AGCTATCTAT TTGCCTGTCC TAGAAAAAGA
  AACAGTAAAC TGTCTACAAC ATCAGGTGTG AGCTAACTAG CAGGAAGTAG GCAAACAGGG
  AGGGAGTGAC AAATGGAAGT TATGTCCTGT TCTTCCACTA GGTAGCCTCT TAAGTTACCA
  AAGACTTTTC TTTCATAGAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46376355	mCV23332475	ABI	CRAMUS_MOUSE	f	SNP	A	G	G	G
ss137081801	ENSMUSSNP690321	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G		G
ss323234322	CHEV_9_123700459	CHEVERUD	SCREENING_POP	f	SNP					G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30134869					SNP	A	G	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:123620406 () rs orientation: forward

Symbol	Name	Function Class
Fyco1	FYVE and coiled-coil domain containing 1	within coordinates
Tssr92157	transcription start site region 92157	713 bp downstream
Tssr92158	transcription start site region 92158	728 bp downstream
Tssr92159	transcription start site region 92159	736 bp downstream
Tssr92160	transcription start site region 92160	1129 bp downstream
Tssr92161	transcription start site region 92161	1146 bp downstream