rs30135115 SNP Detail

Summary

• ID
  rs30135115
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:115819912 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATATTTGCAG TAAGTCCTCC
  CTAAGGCCAC ATAGCACCAT GGGACTCGAA GGGCAGGTGG TGACAGCACT GTGTCCATGC
  CAGCCTTCTA AAAGCTGCTG CTTTTAATTT CATGCCTAAC ATATTGATCA ATGAATTGTA
  CTTTTTTCTG TGCTAACAGG TTTTTTTCCT GCCCCCAAAA CGACATCTTT TTAGGCAAAA
  Y
  GTTCTTTTAT TGTTGTTGTT GTTAATTACT TTTTTATTAG ATATTTTCTT CATTTACATT
  TCAAATGCTA TCCTGAAAGC CCCCTATACC CTCCCCCCTT CCTGCTCCCC TACCCACCCA
  CTCCCACTTC TTGGCCCTGG CGTTCCCCTG TACTGGGGCA TATAAAGTTT GCAAGACCAA
  GGGGCCTCTC TTCCCAAAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss46917195	NES10677767	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs30135115					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46917195	NES10677767	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:115819912 () rs orientation: forward

Symbol	Name	Function Class
Extl2	exostosin-like glycosyltransferase 2	Intron
Rr583641	regulatory region 583641	228 bp distal