rs30135274 SNP Detail

Summary

• ID
  rs30135274
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:115921656 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGAGA CAGATCTAAC TTATTAAACA
  M
  AAACTCTCTG AGATATAAAA GCAAA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45485427	mCV24780503	ABI	CRAMUS_MOUSE	f	SNP		C					A		C
ss46918365	NES10671971	PERLEGEN	MM_PANEL2	f	SNP	A	C	C	C	A	C		A	C	C	A		A	C	C	A		A
ss135669137	ENSMUSSNP3926489	ENSEMBL	ENSEMBL_Sanger	f	SNP		C							C
ss320894366	CHEV_3_115830925	CHEVERUD	SCREENING_POP	f	SNP												C					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30135274					SNP	A	C	C	C	A	C	A	A	C	C	A	C	A	C	C	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46918365	NES10671971	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:115921656 () rs orientation: forward

Symbol	Name	Function Class
Gm43109	predicted gene 43109	444 bp upstream
Rr583656	regulatory region 583656	357 bp distal
Rr583657	regulatory region 583657	1440 bp proximal
Tssr35297	transcription start site region 35297	1368 bp downstream
Tssr35298	transcription start site region 35298	1442 bp downstream
Tssr35299	transcription start site region 35299	1608 bp downstream
Vcam1	vascular cell adhesion molecule 1	Intron