rs30135436 SNP Detail

Summary

• ID
  rs30135436
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:107426274 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACAAG GTCTTGGACC TAGTAGACTA
  Y
  TGCCACCGCA AGCTGATACT GCTAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46375772	mCV24365948	ABI	CRAMUS_MOUSE	f	SNP	C	T	T
ss136948262	ENSMUSSNP1054200	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		T
ss323191572	CHEV_9_107451406	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30135436					SNP	C	T	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:107426274 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22291	CpG island 22291	1616 bp distal
Cpgi22292	CpG island 22292	1864 bp proximal
Gm34106	predicted gene, 34106	within coordinates
Rr401661	regulatory region 401661	1726 bp downstream
Tssr86983	transcription start site region 86983	1696 bp downstream
Tssr86984	transcription start site region 86984	1695 bp upstream
Tssr91394	transcription start site region 91394	1760 bp downstream
Zmynd10	zinc finger, MYND domain containing 10	within coordinates