rs30136440 SNP Detail

Summary

• ID
  rs30136440
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:14929605 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCCTGCATA CAAACGCTGC
  TCAGACACAC ATGTACACAA AACACACAAA ATAAAACATG TTCAGAATGA ATGATGAGGC
  AGCCTCTCGG CAGGCATATG TATTTTGCAC CATGAAGCTG CTTTCTCAGA GAATCCAGCA
  GCCATACGGC AGGGAAAGAC CAGGCATCCT GTGGGGGTTC GTGCTAGAAG GTGAGACAGA
  Y
  ACCTTTACTA CCCCAGTTGC CTTGATATAT GCACTTGCTG CGCAGATACC TCCGTTTAGC
  TGTATGGGTG AATTGCTCCT GGAAAATTGC AACCTCACAG GGCCCAAAGA GTCTCAAAAT
  AGCCACCCAG AAGAACCCAG GCATATAGGC CAAACCCAGA GAAAGCCAGG GCCGAGAGAC
  AGTGGAATGT TGGTCGCATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47418452	NES11500392	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30136440					SNP	C	C	C	C	C	C	C	C	C	T	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47418452	NES11500392	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:14929605 () rs orientation: forward

Symbol	Name	Function Class
Cln8	CLN8 transmembrane ER and ERGIC protein	1730 bp upstream
Gm64195	predicted gene, 64195	355 bp upstream
Rr660118	regulatory region 660118	within coordinates
Rr660119	regulatory region 660119	332 bp distal
Rr660120	regulatory region 660120	195 bp distal
Rr660121	regulatory region 660121	475 bp proximal
Tssr76455	transcription start site region 76455	1963 bp upstream