rs30136957 SNP Detail

Summary

• ID
  rs30136957
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:8545928 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTCTAACTG ACCCTTCCAT
  TTCTGGGAAA TTAAGATATA ATTCAGACAA GATAAAACTC ACCTCTTAAG TTATACTGTC
  CAGTATTTTT TTTCCTAATG TAATAGTCAT TACCTTTTGT ATCCACAGTC TGTAGGTAAT
  TTCAGGACAT TTTTGTCAAT GTTATATTTG CTGTCCAATT AGAAATCTCT TTCTTTCTTT
  Y
  CTTCCCTCTG CCTCCGTCCC TGAGGGTGTG CAGGGGTGGT ACTGTGCAGA TGTGCTTGCC
  CACATGTTAG TGTGTAGAGG CCAGAGATGG ACATAGATTA TCTTCCTCTA CAGTGCTCCA
  TATTACTTTT TGGGAGACAG GGTCTCTCAC TGACCTGAAG TTCATCATTT TGCTTAGACT
  GGCAGACTGG ACTCTAACCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46378131	mCV23954783	ABI	CRAMUS_MOUSE	f	SNP	T	C	C	C
ss136194976	ENSMUSSNP3193006	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30136957					SNP	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:8545928 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21347	CpG island 21347	1124 bp distal
Rr197781	regulatory region 197781	1673 bp proximal
Rr206822	regulatory region 206822	927 bp distal
Rr211022	regulatory region 211022	273 bp proximal
Trpc6	transient receptor potential cation channel, subfamily C, member 6	within coordinates
Tssr83785	transcription start site region 83785	1702 bp downstream
Tssr83786	transcription start site region 83786	1669 bp downstream
Tssr83787	transcription start site region 83787	1395 bp downstream