rs30137369 SNP Detail

Summary

• ID
  rs30137369
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:14930161 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTAGACCACC GTGGGGTCTT
  TTTGACCCCA CGGAGTCTAG AGTCTACCCA CCACTACTGT GAAAAAAAAA AATGTCTATT
  CTCACCAAAT CCCTAGAACC TGGAGACACA CCATACATAC CATACCATAC CATACCATAC
  CATACCATAC CATACCATAC CATACCATAC ATACCAAGCA GGTCACAAGG AGCACCCATT
  Y
  AGCCTTGCAG TGAGAGCTCA GGGATGGAAA AGTGGGCGGG GCTACAGGGG CCAGTGCGCA
  AGGATGCAGG AGGAGCGAGT ATTTTCTGTG TAGTAGAGCC CGATAAGCAG GGCTGGTGCA
  CTCTGGTCAG TCCTGTGTCT GTGGAAAGCC CTTGGCTATC TTCCCACAGC TGTGAACCTG
  GGCGTATAGC CAGGCCCCAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47418461	NES11500300	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30137369					SNP	T	T	T	T	T	T	C	T	T	T	C	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47418461	NES11500300	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:14930161 () rs orientation: forward

Symbol	Name	Function Class
Cln8	CLN8 transmembrane ER and ERGIC protein	1174 bp upstream
Gm64195	predicted gene, 64195	911 bp upstream
Rr660118	regulatory region 660118	508 bp distal
Rr660119	regulatory region 660119	888 bp distal
Rr660120	regulatory region 660120	751 bp distal
Rr660121	regulatory region 660121	within coordinates
Tssr76455	transcription start site region 76455	1407 bp upstream
Tssr76456	transcription start site region 76456	1458 bp upstream
Tssr76457	transcription start site region 76457	1468 bp upstream