rs30137372 SNP Detail

Summary

• ID
  rs30137372
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:14930253 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGGA GGAGCGAGTA TTTTCTGTGT
  R
  GTAGAGCCCG ATAAGCAGGG CTGGT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46165946	mCV23779161	ABI	CRAMUS_MOUSE	f	SNP		G					A
ss47418464	NES11500301	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G		A	G	G	G		A	G	A	A		A
ss148693147	ENSMUSSNP5677228	ENSEMBL	ENSEMBL_Sanger	f	SNP		G
ss322516990	CHEV_8_14880253	CHEVERUD	SCREENING_POP	f	SNP												G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30137372					SNP	G	G	G	G	G	G	A	A	G	G	G	G	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47418464	NES11500301	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:14930253 () rs orientation: forward

Symbol	Name	Function Class
Cln8	CLN8 transmembrane ER and ERGIC protein	1082 bp upstream
Gm64195	predicted gene, 64195	1003 bp upstream
Rr660118	regulatory region 660118	600 bp distal
Rr660119	regulatory region 660119	980 bp distal
Rr660120	regulatory region 660120	843 bp distal
Rr660121	regulatory region 660121	within coordinates
Tssr76455	transcription start site region 76455	1315 bp upstream
Tssr76456	transcription start site region 76456	1366 bp upstream
Tssr76457	transcription start site region 76457	1376 bp upstream