rs30137626 SNP Detail

Summary

• ID
  rs30137626
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:115455098 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGTGGACTT GGTTAATCCC
  AGGACCTCTT TGTCCCTCTT CACATTTTGA CCATACTGCG TTGGCCACTG TTCCCTGTGT
  TTCGCTATGA CTTTTCTGTT TAATGAACCT ACTGAGGATG GATAGCTGAG CGGAGCATCT
  CAGGGCTGCC AGGGCCTGGG CTCTGACCCT AATAACTCTG CTAACATTTA GAGAGGACGG
  R
  AAACAGCCCA GTGTCATTAT ACCTCATTTG ACAGTGTGGC CCGACATCCT TGATAAAAAC
  AAAGGACTTG GGATAGGACA AGTAAGCTGC AAACCTTGGA AGCTTCCGGG AAGAGGGAGA
  TAGGGAAAAG GAAGAGAAAA AAATCACGCC CTCTTGCGTT AGGGAGGCGG AGCGCGGCGG
  TGGGGGTTAG GGCCAAGGGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46378587	mCV23199481	ABI	CRAMUS_MOUSE	f	SNP	A	G					G		G
ss50798468	NES14206642	PERLEGEN	MM_PANEL2	f	SNP	A	G	A	G	G	G		G	G	G	G		G	G	G	G		G
ss137015223	ENSMUSSNP1503485	ENSEMBL	ENSEMBL_Sanger	f	SNP		G							G
ss323208662	CHEV_9_115535148	CHEVERUD	SCREENING_POP	f	SNP												A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30137626					SNP	A	G	A	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50798468	NES14206642	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:115455098 () rs orientation: forward

Symbol	Name	Function Class
Gm68175	predicted gene, 68175	within coordinates
Gm68176	predicted gene, 68176	922 bp downstream
n-R5s92	nuclear encoded rRNA 5S 92	570 bp downstream
Rr370673	regulatory region 370673	1732 bp downstream
Rr687898	regulatory region 687898	1595 bp distal