rs30138055 SNP Detail

Summary

• ID
  rs30138055
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:46987336 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCATGAAT ATAAAGATTT
  TTCTACTTTT AGAAATTATC ATGTAAAACC TAGATGAGAA AAAAAGATAC ATAAAATTGA
  TATGAGCTTT CCAATCCTGG AATTTGATTG GATTGATACC CTAAGATATA AAACATGATA
  AATGATATAA ATTGTGTTTG TTAAATGCAT AATATCATTC ATGGTAAAAA TTATTTCTGG
  Y
  GGAGTAGCAG ATCCAAAAGC TTGGAGTTCA AATTCTACTC ACTTGTTTAA TCTCTCTAGC
  CTCAAACTTG CATCTGCAAA ACATGATAAT ATATAACAAC GTGGTTAATA AAGATACAAT
  ATAAAAATGG ATGAAAAGAA TTTTAAATGA ATGAAAAACA TATTGGAAGG TATTAGTGTA
  TAAAGTTGTC AGTGAATGTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46917514	NES10944868	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30138055					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46917514	NES10944868	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:46987336 () rs orientation: forward

Symbol	Name	Function Class
Gm14648	predicted gene 14648	1886 bp upstream
Rr4054	regulatory region 4054	736 bp distal