rs30138255 SNP Detail

Summary

• ID
  rs30138255
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:14930259 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGGAGACA CACCATACAT
  ACCATACCAT ACCATACCAT ACCATACCAT ACCATACCAT ACCATACCAT ACATACCAAG
  CAGGTCACAA GGAGCACCCA TTTAGCCTTG CAGTGAGAGC TCAGGGATGG AAAAGTGGGC
  GGGGCTACAG GGGCCAGTGC GCAAGGATGC AGGAGGAGCG AGTATTTTCT GTGTAGTAGA
  R
  CCCGATAAGC AGGGCTGGTG CACTCTGGTC AGTCCTGTGT CTGTGGAAAG CCCTTGGCTA
  TCTTCCCACA GCTGTGAACC TGGGCGTATA GCCAGGCCCC AAGGGTGTCT GAAGTCACTT
  ACAACACAGC AAGTATAAAC CGCAACAAAT GTACGAATAT CACAGGAACG TAAAGCCTCC
  ACTGAGGCCT TAGCCACGTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47418467	NES11500302	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30138255					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47418467	NES11500302	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:14930259 () rs orientation: forward

Symbol	Name	Function Class
Cln8	CLN8 transmembrane ER and ERGIC protein	1076 bp upstream
Gm64195	predicted gene, 64195	1009 bp upstream
Rr660118	regulatory region 660118	606 bp distal
Rr660119	regulatory region 660119	986 bp distal
Rr660120	regulatory region 660120	849 bp distal
Rr660121	regulatory region 660121	within coordinates
Tssr76455	transcription start site region 76455	1309 bp upstream
Tssr76456	transcription start site region 76456	1360 bp upstream
Tssr76457	transcription start site region 76457	1370 bp upstream