rs30138261 SNP Detail

Summary

• ID
  rs30138261
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:14931300 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATGAAGAAC ACACTCAAGT
  TGTCATGCTG TTTTCTACAA ATGAGTAACT ATCTGTTTCT TGGTAGTTGT TAACACAATC
  CATGTTGTTA GTTTCTGGAG GGAAAAAAAA AGCCAAGTTA TGTATTAGTA AGAATTCTGT
  TCCTGTGTGT CCAGCAGCCA AGTGTATGTA CTCTTGCTGA ACTGTGGCTC TCCTCCTTCA
  W
  AGGAGCCTTA GTGTTCACCA ACTGGGTCAC CCACTTGGGG AGGCTGCTTG CCCACACAGG
  TCTGACAGGA TGTTGTATCC CAATTCGTCA CCTGATGTAG TCTACTTTAT CCAGCTTACA
  CAACAGGTCT GACAACTGGG CTCAGGCCGG CTACTGCCAT GAGCAAGCAG CAAACAGGCA
  GGGCAGGCAC AATTATTACA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
ss47418473	NES11500267	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	T	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
rs30138261					SNP	A	A	A	A	A	A	A	A	A	T	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47418473	NES11500267	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:14931300 () rs orientation: forward

Symbol	Name	Function Class
Cln8	CLN8 transmembrane ER and ERGIC protein	35 bp upstream
Rr660118	regulatory region 660118	1647 bp distal
Rr660120	regulatory region 660120	1890 bp distal
Rr660121	regulatory region 660121	668 bp distal
Tssr76455	transcription start site region 76455	268 bp upstream
Tssr76456	transcription start site region 76456	319 bp upstream
Tssr76457	transcription start site region 76457	329 bp upstream