rs30138683 SNP Detail

Summary

• ID
  rs30138683
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:115834832 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATTCATTTA TGAAAAAAAT
  CAACAGCTCA GAGCAAAATG ATTGTTTGCC TAATATTTGT ACCTACAGTG ATCATCAACA
  TCACATTCAA GACAGATTCA AGAAATGAAA ATATCCTAAG TATTCCACCT GCTCTAAGCA
  ACTGTGCTGA ATCCATCAAG ACAGAGAACA AGATGTGCTT CACTTCACTG TGTCTAATGT
  Y
  TCGAAGATTG TCAGAAAATG CAGTCACAGC TTTACAAACA GTGTTTGCCC AACCTTGGCA
  AACTCAGTCC TTTAATGGAG TTTCCTCTCT TTTCTATGTA ACCGCCTGAT GAGCCTCAGG
  GAATTCACAT GCCATAAACT TTAGCCTGAG CAAAGCAACT CGCATGCTGT TTGGCAACTT
  CCAGGTAAGT TTCTTCTCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46917423	NES10676738	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30138683					SNP	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46917423	NES10676738	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:115834832 () rs orientation: forward

Symbol	Name	Function Class
Rr583646	regulatory region 583646	198 bp distal