rs30139024 SNP Detail

Summary

• ID
  rs30139024
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:46988541 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCTGGTACG GCATTCCCTA
  AATACCATGT GCCATAGATC TCTCTCTGGC ATCATGGCTC TGTACAGAGT CTGAGTATTA
  TCCAGGCCAT GCCATTTGTC TCATGAAATA TTCACATTCA CATCCTCAAA TGACACAGAT
  GTATTCATCC TCTTCACTTT TGGAAAAAAA AAATACAGGA CATGGGAACT ACAGCTTCTG
  K
  GACACAGAAT CCAAACTCAG CCTAGAGACA GCAAAGAGAA AGAGCCATGC ATAAAACATC
  TTCAAGTCTC CTTTACAGTA GTATCAGTGA CTTTTCTGCT GTTGTGATAA AATACAAAGA
  ACAGCGTAAC TTTCTTTTTT TTCATAATTT TTTAATTAAT TATTTTATTT ATTTACATTC
  CAGCCATTAC TCCCCTAATC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss46917523	NES10944871	PERLEGEN	MM_PANEL2	f	SNP	T	G	T	G
SNP Consensus Information
SNP					Consensus Type	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs30139024					SNP	T	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46917523	NES10944871	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:46988541 () rs orientation: forward

Symbol	Name	Function Class
Gm14648	predicted gene 14648	681 bp upstream
Rr4054	regulatory region 4054	1941 bp distal