rs30139147 SNP Detail

Summary

• ID
  rs30139147
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:14931751 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACGCAGGGTG ACTTAGGCCT
  CATTCCCGAA GAAGACCTGC CTATGAAGTC ATCTAATAAA ATTGCCTCAC CCGCCTGGTT
  CTGTCAGCCC TCAGAGAAGA CAGAAGTGCT CTGACTCCTG GTGGCTGGGA GGCTATCTGG
  AGCCTTAGCC CTTCACCACT TTGGGGATTG TTTGGAATCA AGTTTCCCAG CCGGCCCGTC
  Y
  AAGGTTTTGA TTGGATGGCC CATCAGCTCT TCCCAGTTTG ATTCCCAAGT TACAAATCTG
  GAGGCAAAGC CAAGTTCCTG TGATGAAAAA CCAGAAAGAA AATATTTAGG TGAGTTTTTG
  TTTGGGCAGT TATCGAATAG AAGAAACAGC ATGCGCTCTT GTTAGGAGAA ACCTGGGGAT
  TCGCCCTGCT CATTGCCTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47418479	NES11500269	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30139147					SNP	T	T	T	T	T	T	C	T	T	T	C	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47418479	NES11500269	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:14931751 () rs orientation: forward

Symbol	Name	Function Class
Cln8	CLN8 transmembrane ER and ERGIC protein	within coordinates
Rr660121	regulatory region 660121	1119 bp distal
Tssr76455	transcription start site region 76455	176 bp downstream
Tssr76456	transcription start site region 76456	125 bp downstream
Tssr76457	transcription start site region 76457	94 bp downstream