rs30139166 SNP Detail

Summary

• ID
  rs30139166
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:115922702 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGAGAGAG AGAACAAGTT
  TACCATGGTC TGCCCCATAC TGTGTCCTTT TTCTCTTGCG CAGCAATACA GTGTCCAAAG
  CACAGCTGGG ATGATCTACT TTTTAAACTG TCTCAGACTA ATAGCACAAG ACAGACCCAA
  AGCCCTGAAG TTGCTCTTGA GGAAGGTGCT GGAATCGTCA CCGCGAAGAA GAATGCTCAG
  Y
  TCTGACTTTG AAGCCCATTG CACAAAGTTT TTTTTTTTTT TTTTTTTTTT TTTTTTGTCA
  CTTTCTAAGC TTGATTTCAT TGTCGAATAC AGGAAACTAA AGAGATAGAC CCACTACCGA
  TATAATCCAA ATTACTCATT TGACAGTGGA AAGAAAATCC GTCCCCAGCT CTGTCAGAAT
  ACTGGCTCTT ATAGCAAAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46918407	NES10671987	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30139166					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46918407	NES10671987	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:115922702 () rs orientation: forward

Symbol	Name	Function Class
D3Mit215	DNA segment, Chr 3, Massachusetts Institute of Technology 215	1403 bp proximal
Gm43109	predicted gene 43109	within coordinates
Rr583656	regulatory region 583656	1403 bp distal
Rr583657	regulatory region 583657	394 bp proximal
Tssr35297	transcription start site region 35297	322 bp downstream
Tssr35298	transcription start site region 35298	396 bp downstream
Tssr35299	transcription start site region 35299	562 bp downstream
Vcam1	vascular cell adhesion molecule 1	Intron