rs30139525 SNP Detail

Summary

• ID
  rs30139525
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:48408501 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGTAA GGGTCCCCAG TGATAGGTGT
  K
  TACCCAACAG CAGGTGAACT TCATA                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46377460	mCV25192134	ABI	CRAMUS_MOUSE	f	SNP		T	T					G		T
ss61394045	NES16775881	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T	T		G		T	G		G	T	T	G		T
ss136454996	ENSMUSSNP5749197	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T							T
ss322954395	CHEV_9_48305306	CHEVERUD	SCREENING_POP	f	SNP													T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30139525					SNP	T	T	T	T	T	T	T	G	G	T	T	G	T	G	T	T	G	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61394045	NES16775881	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:48408501 () rs orientation: forward

Symbol	Name	Function Class
1700121I08Rik	RIKEN cDNA 1700121I08 gene	844 bp upstream
Cpgi21716	CpG island 21716	1181 bp distal
Gm5617	predicted gene 5617	1229 bp downstream
Gm70225	predicted gene, 70225	within coordinates
Rbm7	RNA binding motif protein 7	1902 bp upstream
Rr195326	regulatory region 195326	301 bp distal
Rr206379	regulatory region 206379	700 bp distal
Rr401354	regulatory region 401354	1683 bp downstream
Tssr2862	transcription start site region 2862	1303 bp upstream
Tssr84990	transcription start site region 84990	1981 bp downstream
Tssr84991	transcription start site region 84991	1935 bp downstream
Tssr84992	transcription start site region 84992	1801 bp downstream
Tssr84993	transcription start site region 84993	1750 bp downstream
Tssr84994	transcription start site region 84994	1291 bp downstream
Tssr89394	transcription start site region 89394	1928 bp upstream
Tssr89395	transcription start site region 89395	1883 bp upstream
Tssr89396	transcription start site region 89396	1866 bp upstream