rs30139610 SNP Detail

Summary

• ID
  rs30139610
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:51341826 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGTAT GTAGAGCTTT CAACTCAATA
  W
  GTAAGTTTGC TTTGATCGGA GTCTA                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	LG/J	MOLF/EiJ	SM/J
ss39154636	mCV24932388	ABI	CRAMUS_MOUSE	f	SNP	T	T	T					A	T
ss49182645	NES12492254	PERLEGEN	MM_PANEL2	f	SNP			T	T	T	A	T				A
ss139474625	ENSMUSSNP4206619	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T						T
ss324621062	CHEV_14_51724044	CHEVERUD	SCREENING_POP	f	SNP										T		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	LG/J	MOLF/EiJ	SM/J
rs30139610					SNP	T	T	T	T	T	A	T	A	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49182645	NES12492254	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:51341826 () rs orientation: forward

Symbol	Name	Function Class
Rnase4	ribonuclease, RNase A family 4	within coordinates
Rr288976	regulatory region 288976	426 bp distal
Rr288977	regulatory region 288977	575 bp proximal
Rr295428	regulatory region 295428	1800 bp proximal
Rr299307	regulatory region 299307	635 bp distal
Tssr125402	transcription start site region 125402	505 bp upstream
Tssr125403	transcription start site region 125403	581 bp upstream
Tssr125404	transcription start site region 125404	794 bp upstream
Tssr125405	transcription start site region 125405	959 bp upstream
Tssr125406	transcription start site region 125406	1043 bp upstream
Tssr128409	transcription start site region 128409	1007 bp downstream
Tssr128410	transcription start site region 128410	1044 bp downstream